SOAPnuke-1.5.3/SOAPnuke filter  -d -n 0.02 -l 20 -q 0.4 -Q 2 -G -i -5 1 -1 WHDNASPEP00005195/170629_I137_FCHHL5WBBXX_L8_wHAXPI051964-106/170629_I137_FCHHL5WBBXX_L8_wHAXPI051964-106_1.fq.gz -2 WHDNASPEP00005195/170629_I137_FCHHL5WBBXX_L8_wHAXPI051964-106/170629_I137_FCHHL5WBBXX_L8_wHAXPI051964-106_2.fq.gz  -f AGATCGGAAGAGCACACGTCTGAACTCCAGTCAC  -r AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTA -o /ifswh1/BC_COM_P3/F17FTSNCKF1543/SORipaD/S01.Filter//SOAPnuke/wHAXPI051964-106 -C wHAXPI051964-106_1.fq.gz -D wHAXPI051964-106_2.fq.gz 
SOAPnuke-1.5.3/SOAPnuke filter  -d -n 0.02 -l 20 -q 0.4 -Q 2 -G -i -5 1 -1 WHDNASPEP00005196/170630_I133_FCHHL2LBBXX_L8_wHAXPI051963-113/170630_I133_FCHHL2LBBXX_L8_wHAXPI051963-113_1.fq.gz -2 WHDNASPEP00005196/170630_I133_FCHHL2LBBXX_L8_wHAXPI051963-113/170630_I133_FCHHL2LBBXX_L8_wHAXPI051963-113_2.fq.gz  -f AGATCGGAAGAGCACACGTCTGAACTCCAGTCAC  -r AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTA -o /ifswh1/BC_COM_P3/F17FTSNCKF1543/SORipaD/S01.Filter//SOAPnuke/wHAXPI051963-113 -C wHAXPI051963-113_1.fq.gz -D wHAXPI051963-113_2.fq.gz 
SOAPnuke-1.5.3/SOAPnuke filter  -d -n 0.05 -l 20 -q 0.6 -Q 2 -G -i -5 1 -1 WHDNASPEP00005278/170721_I136_FCHK3CLBBXX_L2_WHSORipaDDAADWAAPEI-18/170721_I136_FCHK3CLBBXX_L2_WHSORipaDDAADWAAPEI-18_1.fq.gz -2 WHDNASPEP00005278/170721_I136_FCHK3CLBBXX_L2_WHSORipaDDAADWAAPEI-18/170721_I136_FCHK3CLBBXX_L2_WHSORipaDDAADWAAPEI-18_2.fq.gz  -f AGATCGGAAGAGCACACGTCTGAACTCCAGTCAC  -r AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTA -o /ifswh1/BC_COM_P3/F17FTSNCKF1543/SORipaD/S01.Filter//SOAPnuke/WHSORipaDDAADWAAPEI-18 -C WHSORipaDDAADWAAPEI-18_1.fq.gz -D WHSORipaDDAADWAAPEI-18_2.fq.gz 
SOAPnuke-1.5.3/SOAPnuke filter  -d -n 0.05 -l 20 -q 0.6 -Q 2 -G -i -5 1 -1 WHDNASPEP00005278/170721_I136_FCHK3CLBBXX_L2_WHSORipaDDABDLAAPEI-57/170721_I136_FCHK3CLBBXX_L2_WHSORipaDDABDLAAPEI-57_1.fq.gz -2 WHDNASPEP00005278/170721_I136_FCHK3CLBBXX_L2_WHSORipaDDABDLAAPEI-57/170721_I136_FCHK3CLBBXX_L2_WHSORipaDDABDLAAPEI-57_2.fq.gz  -f AGATCGGAAGAGCACACGTCTGAACTCCAGTCAC  -r AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTA -o /ifswh1/BC_COM_P3/F17FTSNCKF1543/SORipaD/S01.Filter//SOAPnuke/WHSORipaDDABDLAAPEI-57 -C WHSORipaDDABDLAAPEI-57_1.fq.gz -D WHSORipaDDABDLAAPEI-57_2.fq.gz 
